Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs4718429 chr7:66421688 G/C 0.000217 178 24.7 29.57 33.17 KM Plot
PCPG rs4726097 chr7:151497968 C/G 9.7E-6 178 25.6 25.4 3.17 KM Plot
PCPG rs4766327 chr12:5110832 C/T 3.08E-5 178 25.4 24.23 14.4 KM Plot
PCPG rs4766540 chr12:111586426 A/G 2.46E-7 171 25.87 22.5 8.2 KM Plot
PCPG rs478263 chr3:80680042 A/G 0.000182 176 19.53 24.5 27.2 KM Plot
PCPG rs4783145 chr16:85227735 C/G 2.04E-7 170 25.92 21.95 17.43 KM Plot
PCPG rs4785684 chr16:89574576 G/A 0.000314 176 26.78 25.17 19.87 KM Plot
PCPG rs4785685 chr16:89578756 C/G 0.000207 176 26.78 25.28 19.53 KM Plot
PCPG rs4785686 chr16:89587871 A/C 0.000269 177 26.78 25.67 19.25 KM Plot
PCPG rs4785688 chr16:89595509 C/T 0.000362 176 27.6 25.28 19.2 KM Plot
PCPG rs4785689 chr16:89595516 G/A 0.000411 176 27.6 25.4 18.7 KM Plot
PCPG rs4789695 chr17:80473582 C/T 6.99E-5 171 25.77 22.83 7.2 KM Plot
PCPG rs4789787 chr17:80509786 C/T 4.17E-5 178 25.92 20.13 7.2 KM Plot
PCPG rs4820671 chr22:21275150 A/C 7.74E-5 177 12.57 31.68 25.2 KM Plot
PCPG rs4820673 chr22:21297960 T/C 7.74E-5 177 12.93 31.47 25.2 KM Plot